305 research outputs found
Phylum Tardigrada: A re-evaluation of the Parachela
We assessed the available morphological evidence to see if this corroborates the paraphyly in the Parachela (Tardigrada) as suggested by recent molecular data. We reconcile molecular phylogenetics with alpha morphology, focusing on claw and apophysis for the insertion of the stylet muscles (AISM). We combine molecular and morphological evidence to define six new taxa within the Parachela Schuster et al 1980. These include two new families of Isohypsibiidae fam. nov. and Ramazzottidae fam. nov. along with four new superfamilies of Eohypsibioidea superfam. nov., Hypsibioidea super- fam. nov., Isohypsibioidea superfam. nov., and Macrobiotoidea superfam. nov.</jats:p
Polar diversity of the Tardigrada: A combined morphological / molecular approach.
http://www.uam.es/otros/cn-scar//SCAR_IASC_IPY/pdf/17167.pdfPOLAR DIVERSITY OF THE TARDIGRADA: A COMBINED MORPHOLOGICAL / MOLECULAR APPROACH C.J. Sands1 , S.J. McInnes1 , N.J. Marley2 , W.P. Goodall-Copestake1 , P. Convey1 , L. Linse1 1 - Natural Environment Research Council, British Antarctic Survey, High Cross, Madingley Road, Cambridge, CB3 0ET, United Kingdom 2 - Marine Biology and Ecology Research Centre, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, United Kingdom [email protected] Examining the spatial distributions of organisms can provide information regarding their evolutionary history. We are investigating the origins and the processes that influence the contemporary distribution and diversity of Antarctic terrestrial biota. Tardigrades were chosen as a model group, as representatives are found in a diverse range of habitats across the Antarctic continent and sub-Antarctic islands. Our investigations involving approximately 400 individuals and 3 genes have identified systematic complexity requiring attention in order to prevent confounding the biogeographic signal. To overcome the challenges inherent in taxonomic and molecular work on very tiny animals (meiofauna), we have developed a protocol that allows efficient sample extraction and identification without interfering with downstream molecular processes. Our protocol provides joint morphological/molecular assessment of tardigrade taxonomy at the level of the individual that has resulted in identification of numerous cryptic species, cryptic genera and even cryptic families. To resolve polyphyly at the family level we have proposed three superfamilies that are strongly supported by molecular analyses. Here we present a systematic revision of the phylum Tardigrada along with some novel insights regarding Antarctic tardigrade biogeography
Design of Experiments for Screening
The aim of this paper is to review methods of designing screening
experiments, ranging from designs originally developed for physical experiments
to those especially tailored to experiments on numerical models. The strengths
and weaknesses of the various designs for screening variables in numerical
models are discussed. First, classes of factorial designs for experiments to
estimate main effects and interactions through a linear statistical model are
described, specifically regular and nonregular fractional factorial designs,
supersaturated designs and systematic fractional replicate designs. Generic
issues of aliasing, bias and cancellation of factorial effects are discussed.
Second, group screening experiments are considered including factorial group
screening and sequential bifurcation. Third, random sampling plans are
discussed including Latin hypercube sampling and sampling plans to estimate
elementary effects. Fourth, a variety of modelling methods commonly employed
with screening designs are briefly described. Finally, a novel study
demonstrates six screening methods on two frequently-used exemplars, and their
performances are compared
Layered convection as the origin of Saturn's luminosity anomaly
As they keep cooling and contracting, Solar System giant planets radiate more
energy than they receive from the Sun. Applying the first and second principles
of thermodynamics, one can determine their cooling rate, luminosity, and
temperature at a given age. Measurements of Saturn's infrared intrinsic
luminosity, however, reveal that this planet is significantly brighter than
predicted for its age. This excess luminosity is usually attributed to the
immiscibility of helium in the hydrogen-rich envelope, leading to "rains" of
helium-rich droplets. Existing evolution calculations, however, suggest that
the energy released by this sedimentation process may not be sufficient to
resolve the puzzle. Here, we demonstrate using planetary evolution models that
the presence of layered convection in Saturn's interior, generated, like in
some parts of Earth oceans, by the presence of a compositional gradient,
significantly reduces its cooling. It can explain the planet's present
luminosity for a wide range of configurations without invoking any additional
source of energy. This suggests a revision of the conventional homogeneous
adiabatic interior paradigm for giant planets, and questions our ability to
assess their heavy element content. This reinforces the possibility for layered
convection to help explaining the anomalously large observed radii of
extrasolar giant planets.Comment: Published in Nature Geoscience. Online publication date: April 21st,
2013. Accepted version before journal editing and with Supplementary
Informatio
VPS29 Is Not an Active Metallo-Phosphatase but Is a Rigid Scaffold Required for Retromer Interaction with Accessory Proteins
VPS29 is a key component of the cargo-binding core complex of retromer, a protein assembly with diverse roles in transport of receptors within the endosomal system. VPS29 has a fold related to metal-binding phosphatases and mediates interactions between retromer and other regulatory proteins. In this study we examine the functional interactions of mammalian VPS29, using X-ray crystallography and NMR spectroscopy. We find that although VPS29 can coordinate metal ions Mn2+ and Zn2+ in both the putative active site and at other locations, the affinity for metals is low, and lack of activity in phosphatase assays using a putative peptide substrate support the conclusion that VPS29 is not a functional metalloenzyme. There is evidence that structural elements of VPS29 critical for binding the retromer subunit VPS35 may undergo both metal-dependent and independent conformational changes regulating complex formation, however studies using ITC and NMR residual dipolar coupling (RDC) measurements show that this is not the case. Finally, NMR chemical shift mapping indicates that VPS29 is able to associate with SNX1 via a conserved hydrophobic surface, but with a low affinity that suggests additional interactions will be required to stabilise the complex in vivo. Our conclusion is that VPS29 is a metal ion-independent, rigid scaffolding domain, which is essential but not sufficient for incorporation of retromer into functional endosomal transport assemblies
Atmospheric retrieval of exoplanets
Exoplanetary atmospheric retrieval refers to the inference of atmospheric
properties of an exoplanet given an observed spectrum. The atmospheric
properties include the chemical compositions, temperature profiles,
clouds/hazes, and energy circulation. These properties, in turn, can provide
key insights into the atmospheric physicochemical processes of exoplanets as
well as their formation mechanisms. Major advancements in atmospheric retrieval
have been made in the last decade, thanks to a combination of state-of-the-art
spectroscopic observations and advanced atmospheric modeling and statistical
inference methods. These developments have already resulted in key constraints
on the atmospheric H2O abundances, temperature profiles, and other properties
for several exoplanets. Upcoming facilities such as the JWST will further
advance this area. The present chapter is a pedagogical review of this exciting
frontier of exoplanetary science. The principles of atmospheric retrievals of
exoplanets are discussed in detail, including parametric models and statistical
inference methods, along with a review of key results in the field. Some of the
main challenges in retrievals with current observations are discussed along
with new directions and the future landscape
Search for High-Mass Resonances Decaying to τν in pp Collisions at √s=13 TeV with the ATLAS Detector
A search for high-mass resonances decaying to τν using proton-proton collisions at √s=13 TeV produced by the Large Hadron Collider is presented. Only τ-lepton decays with hadrons in the final state are considered. The data were recorded with the ATLAS detector and correspond to an integrated luminosity of 36.1 fb−1. No statistically significant excess above the standard model expectation is observed; model-independent upper limits are set on the visible τν production cross section. Heavy W′ bosons with masses less than 3.7 TeV in the sequential standard model and masses less than 2.2–3.8 TeV depending on the coupling in the nonuniversal G(221) model are excluded at the 95% credibility level
Search for the direct production of charginos and neutralinos in final states with tau leptons in √s=13 TeV collisions with the ATLAS detector
A search for the direct production of charginos and neutralinos in final states with at least two hadronically decaying tau leptons is presented. The analysis uses a dataset of pp collisions corresponding to an integrated luminosity of 36.1 fb−1, recorded with the ATLAS detector at the Large Hadron Collider at a centre-of-mass energy of 13TeV.Nosignificant deviation from the expected Standard Model background is observed. Limits are derived in scenarios of ˜χ+1 ˜χ−1 pair production and of ˜χ±1 ˜χ02 and ˜χ+1 ˜χ−1 production in simplified models where the neutralinos and charginos decay solely via intermediate left-handed staus and tau sneutrinos, and the mass of the ˜ τL state is set to be halfway between the masses of the ˜χ±1 and the ˜χ01. Chargino masses up to 630 GeV are excluded at 95% confidence level in the scenario of direct production of ˜χ+1 ˜χ−1 for a massless ˜χ01. Common ˜χ±1 and ˜χ02 masses up to 760 GeV are excluded in the case of production of ˜χ±1 ˜χ02 and ˜χ+1 ˜χ−1 assuming a massless ˜χ01. Exclusion limits for additional benchmark scenarios with large and small mass-splitting between the ˜χ±1 and the ˜χ01 are also studied by varying the ˜ τL mass between the masses of the ˜χ±1 and the ˜χ01
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